Basic Information
Locus ID:
BH04.905
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 12083079 | 12088231 | + | BH04.905 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 80,820.59 Da | 44.13 | 89.89 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00635 | MSP (Major sperm protein) domain | 301 | 390 | 3.6E-7 | IPR000535 |
| Pfam | PF00400 | WD domain, G-beta repeat | 567 | 600 | 0.046 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 460 | 485 | 0.28 | IPR001680 |
| Pfam | PF00069 | Protein kinase domain | 76 | 280 | 4.1E-17 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 613 | 652 | 6.0E-7 | IPR001680 |
| SUPERFAMILY | SSF49354 | PapD-like | 299 | 440 | 2.07E-11 | IPR008962 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 458 | 677 | 3.21E-31 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 45 | 294 | 3.32E-34 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 454 | 683 | 5.3E-44 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 98 | 298 | 8.2E-36 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 299 | 438 | 2.1E-18 | IPR013783 |
| SMART | SM00320 | WD40_4 | 612 | 652 | 4.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 447 | 485 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 561 | 601 | 0.002 | IPR001680 |
| SMART | SM00320 | WD40_4 | 521 | 558 | 490.0 | IPR001680 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 300 | 434 | 9.357488 | IPR000535 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 619 | 654 | 10.838322 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 298 | 16.880957 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 568 | 601 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 568 | 601 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 619 | 661 | 13.315579 | IPR001680 |
| Coils | Coil | Coil | 406 | 426 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70740.1 | Protein kinase superfamily protein. | 2.67E-26 |
| RefSeq | XP_003577688.2 | uncharacterized protein LOC100831776 isoform X2 [Brachypodium distachyon] | 5.79E-155 |
| Q9CAC3 | Cysteine-rich receptor-like protein kinase 43 OS=Arabidopsis thaliana OX=3702 GN=CRK43 PE=2 SV=2 | 2.25E-25 | |
| TrEMBL | A0A0Q3EN21 | Protein kinase domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100831776 PE=4 SV=1 | 1.07E-154 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH04.905 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0658480 |
| Poaceae | Triticum aestivum | 4 | TraesCS3B02G095200.2, TraesCS3B02G095300.2 ... |