Basic Information
Locus ID:
BH04.79
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Plant protein of unknown function (DUF641)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 710755 | 714019 | + | BH04.79 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 65,024.07 Da | 48.33 | 83.61 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 102 | 145 | 1.27221E-14 | - |
| Pfam | PF13639 | Ring finger domain | 103 | 145 | 8.8E-12 | IPR001841 |
| Pfam | PF04859 | Plant protein of unknown function (DUF641) | 209 | 257 | 2.5E-12 | IPR006943 |
| SUPERFAMILY | SSF57850 | RING/U-box | 96 | 151 | 5.55E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 151 | 1.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 103 | 144 | 4.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 103 | 145 | 12.326995 | IPR001841 |
| Coils | Coil | Coil | 291 | 311 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45260.1 | Plant protein of unknown function (DUF641). | 1.2E-36 |
| RefSeq | XP_004977375.1 | protein GRAVITROPIC IN THE LIGHT 1 [Setaria italica] | 4.96E-224 |
| Q9SRM0 | RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1 | 9.28E-11 | |
| TrEMBL | K3Y7H9 | DUF641 domain-containing protein OS=Setaria italica OX=4555 GN=101767666 PE=4 SV=1 | 1.12E-222 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH04.74, BH04.79, CH04.136 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0672440, gene-QOZ80_9BG0696020 |
| Poaceae | Oryza coarctata | 3 | Oco22G000430, Oco23G000340, Oco23G000410 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g02270.1, LOC_Os12g02230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G020200 |
| Poaceae | Zea mays | 2 | Zm00001eb406160_P001, Zm00001eb406180_P001 |