Basic Information
Locus ID:
BH04.682
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 7979189 | 7985151 | - | BH04.682 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.40 | 82,080.60 Da | 47.23 | 78.09 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 16 | 219 | 5.3E-45 | IPR001574 |
| Pfam | PF00651 | BTB/POZ domain | 287 | 395 | 3.4E-17 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 284 | 395 | 1.26E-17 | IPR011333 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 6 | 259 | 7.2E-39 | IPR036041 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 280 | 399 | 3.3E-21 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 400 | 469 | 4.7E-16 | - |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 183 | 279 | 1.7E-22 | IPR016139 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 181 | 1.1E-49 | IPR016138 |
| SMART | SM00225 | BTB_4 | 289 | 398 | 4.5E-15 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 289 | 351 | 15.680001 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 727 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 548 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 1.59E-31 |
| RefSeq | XP_034569492.1 | protein synthesis inhibitor II-like [Setaria viridis] | 5.35E-199 |
| P04399 | Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 | 6.12E-61 | |
| TrEMBL | A0A4U6TJN1 | rRNA N-glycosidase OS=Setaria viridis OX=4556 GN=SEVIR_8G160500v2 PE=3 SV=1 | 1.21E-197 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology