HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: BH04.644
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: Protein translocase subunit secA
Maps and Mapping Data
Chromosome Start End Strand ID
BH04 7406358 7422974 + BH04.644
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.63 118,303.86 Da 45.13 91.27 -0.30
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd18803 SF2_C_secA 464 735 3.52924E-61 IPR044722
CDD cd17928 DEXDc_SecA 102 458 2.1654E-127 -
Pfam PF07516 SecA Wing and Scaffold domain 765 1040 1.7E-45 IPR011116
Pfam PF07517 SecA DEAD-like domain 77 445 1.6E-117 IPR011115
Pfam PF01043 SecA preprotein cross-linking domain 299 402 3.0E-27 IPR011130
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 461 748 1.11E-41 IPR027417
SUPERFAMILY SSF81886 Helical scaffold and wing domains of SecA 942 1050 5.1E-22 IPR036266
SUPERFAMILY SSF81767 Pre-protein crosslinking domain of SecA 290 411 1.7E-37 IPR036670
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 69 459 1.21E-71 IPR027417
SUPERFAMILY SSF81886 Helical scaffold and wing domains of SecA 768 885 3.53E-20 IPR036266
Gene3D G3DSA:1.10.3060.10 Helical scaffold and wing domains of SecA 770 899 2.6E-14 -
Gene3D G3DSA:3.40.50.300 - 461 767 1.3E-78 IPR027417
Gene3D G3DSA:3.90.1440.10 - 292 412 3.2E-168 -
Gene3D G3DSA:3.40.50.300 - 81 459 3.2E-168 IPR027417
Gene3D G3DSA:1.10.3060.10 Helical scaffold and wing domains of SecA 908 1040 1.4E-19 -
SMART SM00957 SecA_DEAD_2 67 446 3.7E-235 IPR011115
SMART SM00958 SecA_PP_bind_2 291 402 4.3E-44 IPR011130
TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 89 882 4.5E-267 IPR000185
ProSiteProfiles PS51196 SecA family profile. 63 767 133.114838 IPR014018
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 290 15.337807 IPR014001
ProSitePatterns PS01312 SecA family signature. 546 561 - IPR020937
PRINTS PR00906 SecA protein signature 161 175 1.1E-60 IPR000185
PRINTS PR00906 SecA protein signature 457 470 1.1E-60 IPR000185
PRINTS PR00906 SecA protein signature 177 187 1.1E-60 IPR000185
PRINTS PR00906 SecA protein signature 230 250 1.1E-60 IPR000185
PRINTS PR00906 SecA protein signature 420 437 1.1E-60 IPR000185
PRINTS PR00906 SecA protein signature 123 147 1.1E-60 IPR000185
PRINTS PR00906 SecA protein signature 383 405 1.1E-60 IPR000185
Hamap MF_01382 Protein translocase subunit SecA [secA]. 65 1043 17.723181 IPR000185
MobiDBLite mobidb-lite consensus disorder prediction 1 17 - -
MobiDBLite mobidb-lite consensus disorder prediction 1 61 - -
MobiDBLite mobidb-lite consensus disorder prediction 38 52 - -
Gene Ontology
Biological Process:
GO:0006605 (protein targeting) GO:0006886 (intracellular protein transport) GO:0017038 (protein import)
Molecular Function:
GO:0005524 (ATP binding)
Cellular Component:
GO:0016020 (membrane)
KEGG Pathway
KO Term:
K03070 (preprotein translocase subunit SecA [EC:7.4.2.8])
Pathway:
ko02024 (Quorum sensing) map02024 (Quorum sensing) ko03060 (Protein export) map03060 (Protein export) ko03070 (Bacterial secretion system) map03070 (Bacterial secretion system)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G21650.2 Preprotein translocase SecA family protein. Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality. 0
RefSeq XP_025827444.1 protein translocase subunit SECA2, chloroplastic isoform X1 [Panicum hallii] 0
Swiss-Prot D8WUA4 Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA2 PE=1 SV=1 0
TrEMBL A0A2S3ID20 Protein translocase subunit SecA OS=Panicum hallii OX=206008 GN=PAHAL_8G057300 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg10458, jg9019
Aizoaceae Mesembryanthemum crystallinum 2 gene_1077, gene_13408
Amaranthaceae Atriplex hortensis 2 Ah024121, Ah031607
Amaranthaceae Beta vulgaris 2 BVRB_1g010050, BVRB_5g122730
Amaranthaceae Salicornia bigelovii 5 Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ...
Sbi_jg58084
Amaranthaceae Salicornia europaea 2 Seu_jg25704, Seu_jg7111
Amaranthaceae Suaeda aralocaspica 2 GOSA_00004576, GOSA_00020180
Amaranthaceae Suaeda glauca 4 Sgl11665, Sgl17164, Sgl54639, Sgl59975
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ...
gene:ENSEOMG00000031530, gene:ENSEOMG00000034341, gene:ENSEOMG00000044225, gene:ENSEOMG00000046942
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ...
CQ.Regalona.r1.8AG0010550, CQ.Regalona.r1.8BG0011700
Anacardiaceae Pistacia vera 2 pistato.v30007280, pistato.v30039110
Apiaceae Apium graveolens 3 Ag11G03939, Ag6G02443, Ag9G02368
Arecaceae Cocos nucifera 2 COCNU_01G000270, COCNU_15G003170
Arecaceae Phoenix dactylifera 2 gene-LOC103701417, gene-LOC103720122
Asparagaceae Asparagus officinalis 2 AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1
Asteraceae Flaveria trinervia 2 Ftri10G32559, Ftri18G11286
Brassicaceae Arabidopsis thaliana 2 AT1G21650.3, AT4G01800.2
Brassicaceae Eutrema salsugineum 2 Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp1g19170.v2.2, Sp6g01650.v2.2
Brassicaceae Brassica nigra 2 BniB03g009290.2N, BniB08g040660.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq03G1867, Ceq06G0547
Casuarinaceae Casuarina glauca 2 Cgl03G2007, Cgl06G0567
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g06910, gene.Cymno08g07140
Dunaliellaceae Dunaliella salina 2 Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate01g16040, gene.Thate05g12950
Nitrariaceae Nitraria sibirica 2 evm.TU.LG04.547, evm.TU.LG06.839
Plantaginaceae Plantago ovata 2 Pov_00016539, Pov_00021694
Plumbaginaceae Limonium bicolor 2 Lb4G22942, Lb6G30841
Poaceae Echinochloa crus-galli 5 AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ...
gene-QOZ80_9AG0670100, gene-QOZ80_9BG0693570
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1
Poaceae Lolium multiflorum 3 gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524
Poaceae Oryza coarctata 3 Oco01G009280, Oco02G009570, Oco22G003520
Poaceae Oryza sativa 2 LOC_Os01g21820.1, LOC_Os11g08980.1
Poaceae Paspalum vaginatum 2 gene-BS78_03G139800, gene-BS78_05G097000
Poaceae Puccinellia tenuiflora 2 Pt_Chr0103927, Pt_Chr0603665
Poaceae Sporobolus alterniflorus 6 Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ...
Chr16G010730, Chr17G009810
Poaceae Thinopyrum elongatum 2 Tel3E01G338700, Tel4E01G158600
Poaceae Triticum dicoccoides 4 gene_TRIDC3AG028190, gene_TRIDC3BG032070 ...
gene_TRIDC4AG034290, gene_TRIDC4BG015530
Poaceae Triticum aestivum 6 TraesCS3A02G198400.1, TraesCS3B02G222700.1 ...
TraesCS3D02G196700.2, TraesCS4A02G216200.1, TraesCS4B02G100000.1, TraesCS4D02G096200.1
Poaceae Zea mays 2 Zm00001eb090990_P001, Zm00001eb130760_P002
Poaceae Zoysia japonica 2 nbis-gene-27238, nbis-gene-6517
Poaceae Zoysia macrostachya 2 Zma_g10242, Zma_g18533
Portulacaceae Portulaca oleracea 3 evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721
Posidoniaceae Posidonia oceanica 2 gene.Posoc01g13940, gene.Posoc05g18660
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-10616, nbisL1-mrna-18708
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-103, nbisL1-mrna-5559
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-11369, nbisL1-mrna-13125
Rhizophoraceae Kandelia candel 2 evm.TU.utg000002l.412, evm.TU.utg000006l.609
Rhizophoraceae Kandelia obovata 2 Maker00011737, Maker00013085
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-10163, nbisL1-mrna-8110
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-7364, nbisL1-mrna-9803
Salicaceae Populus euphratica 2 populus_peu27429, populus_peu32459
Solanaceae Lycium barbarum 2 gene-LOC132627149, gene-LOC132644885
Solanaceae Solanum chilense 2 SOLCI001197400, SOLCI003112400
Solanaceae Solanum pennellii 2 gene-LOC107002391, gene-LOC107004481
Tamaricaceae Reaumuria soongarica 2 gene_17557, gene_866
Tamaricaceae Tamarix chinensis 2 TC03G2545, TC07G1717
Zosteraceae Zostera marina 4 Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ...
Zosma07g00120.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.