Basic Information
Locus ID:
BH04.597
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 6763494 | 6766867 | + | BH04.597 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 99,365.26 Da | 59.65 | 60.85 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 577 | 609 | 9.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 614 | 651 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 506 | 1.4E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 468 | 788 | 1.28E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 559 | 792 | 5.8E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 455 | 529 | 2.7E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 746 | 787 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 653 | 692 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 468 | 507 | 4.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 609 | 4.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 612 | 651 | 2.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 705 | 745 | 0.48 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 475 | 508 | 13.39558 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 475 | 508 | 16.289801 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 618 | 652 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 578 | 612 | 11.418318 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 618 | 652 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 578 | 618 | 14.552052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 494 | 508 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 596 | 610 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 638 | 652 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 596 | 610 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 494 | 508 | 1.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 907 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 845 | 908 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 338 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 1.35E-122 |
| RefSeq | XP_025828580.1 | uncharacterized protein LOC112903529 [Panicum hallii] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 1.15E-44 | |
| TrEMBL | A0A3L6PGH1 | WD_REPEATS_REGION domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM18G02560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology