Basic Information
Locus ID:
BH04.535
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
PAT1
Description:
Belongs to the GRAS family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 5887685 | 5891988 | - | BH04.535 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 65,871.61 Da | 44.24 | 91.62 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 280 | 558 | 1.9E-49 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 12 | 121 | 1.4E-15 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 259 | 561 | 2.56E-69 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 4 | 176 | 1.35E-31 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 194 | 2.4E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 372 | 577 | 1.7E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 259 | 354 | 1.0E-25 | - |
| SMART | SM00220 | serkin_6 | 280 | 560 | 7.2E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 170 | 17.38978 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 280 | 574 | 37.290451 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 415 | 427 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 286 | 308 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38830.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 26. Encodes a cysteine-rich receptor-like protein kinase. | 1.25E-54 |
| RefSeq | XP_022685272.1 | uncharacterized protein LOC101779165 [Setaria italica] | 2.21E-174 |
| Q9T0J1 | Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana OX=3702 GN=CRK26 PE=2 SV=1 | 1.22E-53 | |
| TrEMBL | A0A835ERR7 | Protein kinase domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_029155 PE=3 SV=1 | 7.07E-180 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology