halophFGD

Basic Information

Locus ID: BH04.387

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: transposition, RNA-mediated

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH04	3620442	3627441	-	BH04.387

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.81	140,113.30 Da	53.26	82.94	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09274	RNase_HI_RT_Ty3	918	1033	3.75127E-44	-
Pfam	PF17919	RNase H-like domain found in reverse transcriptase	889	981	1.6E-30	IPR041577
Pfam	PF03732	Retrotransposon gag protein	609	703	2.1E-13	IPR005162
SUPERFAMILY	SSF56672	DNA/RNA polymerases	880	1018	7.41E-34	IPR043502
SUPERFAMILY	SSF81383	F-box domain	18	64	6.38E-8	IPR036047
Gene3D	G3DSA:3.10.20.370	-	912	983	8.5E-8	-
Gene3D	G3DSA:1.20.5.340	-	391	488	3.0E-7	-
MobiDBLite	mobidb-lite	consensus disorder prediction	761	792	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	771	792	-	-
Coils	Coil	Coil	416	436	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_039809428.1	uncharacterized protein LOC120672884 [Panicum virgatum]	2.13E-110
Swiss-Prot	P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1	7.98E-23
TrEMBL	A0A811N9N8	Retrotrans_gag domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS12381 PE=4 SV=1	2.37E-121

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	22	AH01.1249, AH01.1251, AH01.1252, AH01.2719, AH01.2720 ... BH01.1467, BH01.1473, BH01.1474, BH01.3052, BH01.3053, BH04.387, BH05.659, CH01.3270, CH01.3274, CH01.3275, CH04.394, CH06.2652, CH06.2653, CH06.2654, CH06.2657, CH06.2658, CH07.3455
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_2AG0118890, gene-QOZ80_2BG0164750 ... gene-QOZ80_3AG0224390, gene-QOZ80_3AG0224400, gene-QOZ80_3BG0254470, gene-QOZ80_3BG0269390, gene-QOZ80_3BG0269400
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.7HG0751830.1.CDS1 ... HORVU.MOREX.r3.7HG0752280.1.CDS1
Poaceae	Lolium multiflorum	22	gene-QYE76_001111, gene-QYE76_001112, gene-QYE76_001114 ... gene-QYE76_005542, gene-QYE76_013546, gene-QYE76_014144, gene-QYE76_016710, gene-QYE76_019279, gene-QYE76_019401, gene-QYE76_019593, gene-QYE76_019594, gene-QYE76_019614, gene-QYE76_019615, gene-QYE76_028882, gene-QYE76_049053, gene-QYE76_057230, gene-QYE76_057249, gene-QYE76_057958, gene-QYE76_057981, gene-QYE76_061028, gene-QYE76_062578, gene-QYE76_065348
Poaceae	Paspalum vaginatum	11	gene-BS78_01G071300, gene-BS78_01G145300, gene-BS78_K058100 ... gene-BS78_05G052500, gene-BS78_05G063600, gene-BS78_05G063700, gene-BS78_05G064100, gene-BS78_09G062900, gene-BS78_K058600, gene-BS78_K209900, gene-BS78_K253200
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0100012, Pt_Chr0100530, Pt_Chr0207346, Pt_Chr0500031 ... Pt_Chr0500032, Pt_Chr0500039, Pt_Chr0500197, Pt_Chr0704815, Pt_Chr0704816, Pt_Chr0704895
Poaceae	Sporobolus alterniflorus	1	Chr12G027540
Poaceae	Triticum aestivum	7	TraesCS4A02G249900.1.cds1, TraesCS4B02G064800.1.cds1 ... TraesCS4D02G063600.1.cds1, TraesCS6A02G011000.1.cds1, TraesCS6B02G468100.1.cds1, TraesCS7B02G497900.1.cds1, TraesCS7D02G545300.1.cds1