HalophFGD

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Basic Information
Locus ID: BH04.319
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
BH04 2849356 2850546 - BH04.319
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.57 44,000.78 Da 51.53 83.26 -0.15
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF03478 Protein of unknown function (DUF295) 305 366 2.7E-7 IPR005174
SUPERFAMILY SSF81383 F-box domain 2 40 1.83E-5 IPR036047
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_034568568.1 uncharacterized protein LOC117833244 [Setaria viridis] 1.31E-170
TrEMBL A0A1E5VJX8 DUF295 domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0013572 PE=4 SV=1 1.47E-184
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 15 AH04.349, AH04.350, AH04.351, AH04.352, BH04.319, BH09.47 ...
BH09.48, CH04.333, Contig1337.2, Contig1337.4, Contig1347.1, Contig1347.3, Contig1437.1, Contig1437.2, Contig1476.1
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_9AG0675010, gene-QOZ80_9AG0675020 ...
gene-QOZ80_9BG0698860, gene-QOZ80_9BG0698880
Poaceae Paspalum vaginatum 2 gene-BS78_05G094900, gene-BS78_K254200
Poaceae Sporobolus alterniflorus 1 Chr07G021150
Poaceae Triticum aestivum 1 TraesCS7D02G214100.1.cds1
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