Basic Information
Locus ID:
BH04.317
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 2825062 | 2826966 | + | BH04.317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.86 | 34,226.83 Da | 64.84 | 60.25 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 237 | 267 | 1.7E-8 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 238 | 275 | 2.36E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 221 | 294 | 2.4E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 227 | 267 | 10.217316 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 82 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61180.1 | RING/U-box superfamily protein. | 2.15E-6 |
| RefSeq | XP_022684917.1 | E3 ubiquitin-protein ligase RHF2A-like [Setaria italica] | 1.07E-13 |
| TrEMBL | A0A3L6PZY7 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM17G02020 PE=4 SV=1 | 9.98E-14 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||