Basic Information
Locus ID:
BH04.270
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 2149588 | 2150616 | + | BH04.270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.39 | 35,631.47 Da | 45.32 | 73.51 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 282 | 325 | 4.93719E-16 | - |
| Pfam | PF13639 | Ring finger domain | 282 | 325 | 1.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 278 | 330 | 1.46E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 331 | 2.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 282 | 324 | 2.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 282 | 325 | 11.987676 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 140 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19910.1 | RING/U-box superfamily protein. | 2.09E-11 |
| RefSeq | XP_039840496.1 | E3 ubiquitin-protein ligase MPSR1-like [Panicum virgatum] | 1.51E-21 |
| Q9LT17 | E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana OX=3702 GN=BBR PE=2 SV=1 | 2.07E-10 | |
| TrEMBL | A0A835E443 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_054421 PE=4 SV=1 | 4.68E-24 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||