Basic Information
Locus ID:
BH04.2374
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Putative gypsy type transposon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 37401627 | 37404820 | - | BH04.2374 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 79,963.36 Da | 49.17 | 76.30 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| Coils | Coil | Coil | 602 | 622 | - | - |
| Coils | Coil | Coil | 486 | 552 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034570691.1 | uncharacterized protein LOC117835459 [Setaria viridis] | 6.1E-31 |
| TrEMBL | A0A8T0QA42 | Retrotransposon protein OS=Panicum virgatum OX=38727 GN=PVAP13_7KG057036 PE=4 SV=1 | 1.35E-31 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||