Basic Information
Locus ID:
BH04.2336
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 36980776 | 36984629 | + | BH04.2336 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 69,441.48 Da | 41.22 | 74.59 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 412 | 545 | 2.4754E-65 | - |
| CDD | cd17920 | DEXHc_RecQ | 214 | 411 | 3.08715E-98 | - |
| Pfam | PF16124 | RecQ zinc-binding | 548 | 617 | 3.5E-12 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 430 | 534 | 6.7E-18 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 222 | 391 | 1.6E-14 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 260 | 557 | 1.29E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 412 | 618 | 2.7E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 178 | 411 | 1.5E-82 | IPR027417 |
| SMART | SM00487 | ultradead3 | 216 | 420 | 2.3E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 454 | 536 | 1.7E-24 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 214 | 618 | 1.8E-153 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 433 | 584 | 19.730778 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 228 | 404 | 20.462038 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 343 | 352 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 186 | - | - |
| Coils | Coil | Coil | 3 | 23 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 8.58E-246 |
| RefSeq | XP_004980856.3 | ATP-dependent DNA helicase Q-like 1 [Setaria italica] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 8.24E-245 | |
| TrEMBL | A0A368SAP1 | ATP-dependent DNA helicase OS=Setaria italica OX=4555 GN=SETIT_8G229300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology