Basic Information
Locus ID:
BH04.2314
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 36753906 | 36759628 | + | BH04.2314 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 109,883.58 Da | 39.80 | 89.97 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00665 | Integrase core domain | 310 | 417 | 4.7E-8 | IPR001584 |
| Pfam | PF13456 | Reverse transcriptase-like | 193 | 270 | 5.7E-11 | IPR002156 |
| Pfam | PF00069 | Protein kinase domain | 700 | 963 | 2.9E-32 | IPR000719 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 119 | 173 | 2.9E-10 | IPR041577 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 688 | 972 | 1.37E-53 | IPR011009 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 306 | 443 | 3.67E-30 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 39 | 267 | 3.71E-33 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 27 | 91 | 4.4E-10 | IPR043128 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 686 | 758 | 4.8E-8 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 190 | 297 | 4.5E-16 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 388 | 474 | 8.6E-14 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 300 | 387 | 1.2E-21 | IPR036397 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 759 | 978 | 9.5E-53 | - |
| SMART | SM00220 | serkin_6 | 684 | 976 | 1.8E-13 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 674 | 976 | 30.364792 | IPR000719 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 306 | 387 | 12.16328 | IPR001584 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 804 | 816 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39390.1 | Leucine-rich repeat protein kinase family protein. | 2.99E-62 |
| RefSeq | XP_025806853.1 | protein NYNRIN-like [Panicum hallii] | 4.98E-140 |
| Q2R2D5 | Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. japonica OX=39947 GN=XA21 PE=1 SV=1 | 4.03E-61 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 3.64E-225 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |