HalophFGD

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Basic Information
Locus ID: BH04.2314
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
Chromosome Start End Strand ID
BH04 36753906 36759628 + BH04.2314
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.60 109,883.58 Da 39.80 89.97 -0.20
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00665 Integrase core domain 310 417 4.7E-8 IPR001584
Pfam PF13456 Reverse transcriptase-like 193 270 5.7E-11 IPR002156
Pfam PF00069 Protein kinase domain 700 963 2.9E-32 IPR000719
Pfam PF17919 RNase H-like domain found in reverse transcriptase 119 173 2.9E-10 IPR041577
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 688 972 1.37E-53 IPR011009
SUPERFAMILY SSF53098 Ribonuclease H-like 306 443 3.67E-30 IPR012337
SUPERFAMILY SSF56672 DNA/RNA polymerases 39 267 3.71E-33 IPR043502
Gene3D G3DSA:3.30.70.270 - 27 91 4.4E-10 IPR043128
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 686 758 4.8E-8 -
Gene3D G3DSA:3.30.420.10 - 190 297 4.5E-16 IPR036397
Gene3D G3DSA:3.30.420.10 - 388 474 8.6E-14 IPR036397
Gene3D G3DSA:3.30.420.10 - 300 387 1.2E-21 IPR036397
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 759 978 9.5E-53 -
SMART SM00220 serkin_6 684 976 1.8E-13 IPR000719
ProSiteProfiles PS50011 Protein kinase domain profile. 674 976 30.364792 IPR000719
ProSiteProfiles PS50994 Integrase catalytic domain profile. 306 387 12.16328 IPR001584
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 804 816 - IPR008271
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation) GO:0015074 (DNA integration)
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0004523 (RNA-DNA hybrid ribonuclease activity) GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)
KEGG Pathway
KO Term:
K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])
Pathway:
ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G39390.1 Leucine-rich repeat protein kinase family protein. 2.99E-62
RefSeq XP_025806853.1 protein NYNRIN-like [Panicum hallii] 4.98E-140
Swiss-Prot Q2R2D5 Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. japonica OX=39947 GN=XA21 PE=1 SV=1 4.03E-61
TrEMBL L0P3P1 PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 3.64E-225
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 30 AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ...
BH03.2404, BH03.4279, BH04.1700, BH04.2314, BH07.2266, BH07.3065, BH08.1559, BH09.968, CH01.4222, CH02.2774, CH02.2789, CH03.1862, CH03.870, CH05.2682, CH05.4197, CH06.878, CH07.1301, CH07.1506, CH07.3848, CH08.557, CH09.1858, CH09.250, CH09.457, Contig522.18
Poaceae Lolium multiflorum 2 gene-QYE76_053643, gene-QYE76_056610
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.