Basic Information
Locus ID:
BH04.2247
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Type III restriction enzyme, res subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 35752727 | 35759377 | - | BH04.2247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.80 | 145,062.30 Da | 66.50 | 50.67 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 787 | 916 | 1.18381E-62 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 592 | 762 | 3.7E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 799 | 907 | 1.6E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 640 | 923 | 6.85E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 21 | 55 | 1.8E-7 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 779 | 949 | 2.7E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 545 | 778 | 7.7E-87 | IPR027417 |
| SMART | SM00490 | helicmild6 | 827 | 907 | 6.2E-33 | IPR001650 |
| SMART | SM00487 | ultradead3 | 587 | 790 | 1.6E-64 | IPR014001 |
| SMART | SM00456 | ww_5 | 25 | 56 | 1.7E-5 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 802 | 946 | 25.427212 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 568 | 596 | 11.352551 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 24 | 56 | 11.0929 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 599 | 773 | 30.616188 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 719 | 727 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 30 | 54 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1288 | 1305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1205 | 1235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1097 | 1305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1236 | 1253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1271 | 1287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1142 | 1203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| Coils | Coil | Coil | 1361 | 1361 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 1.81E-219 |
| RefSeq | XP_004980010.1 | DEAD-box ATP-dependent RNA helicase 40 isoform X1 [Setaria italica] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 1.75E-218 | |
| TrEMBL | K3ZGX2 | DEAD-box ATP-dependent RNA helicase 40 OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology