Basic Information
Locus ID:
BH04.2029
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 32931782 | 32936457 | - | BH04.2029 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 47,918.09 Da | 48.12 | 66.79 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 276 | 350 | 2.58467E-31 | - |
| CDD | cd12619 | RRM2_PUB1 | 158 | 232 | 4.14061E-47 | - |
| CDD | cd12352 | RRM1_TIA1_like | 74 | 144 | 1.64879E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 74 | 140 | 8.5E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 278 | 344 | 1.1E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 159 | 229 | 2.0E-19 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 150 | 240 | 3.36E-28 | IPR035979 |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 2 | 64 | 9.15E-5 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 61 | 150 | 1.75E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 264 | 360 | 8.87E-25 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 236 | 357 | 1.1E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 155 | 7.9E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 156 | 235 | 2.1E-25 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 277 | 346 | 2.4 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 158 | 231 | 0.42 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 277 | 346 | 9.4E-20 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 158 | 231 | 9.4E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 73 | 142 | 1.7E-18 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 72 | 146 | 15.76675 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 276 | 350 | 16.960629 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 157 | 235 | 17.932785 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 270 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 4.82E-180 |
| RefSeq | XP_034568882.1 | oligouridylate-binding protein 1B-like [Setaria viridis] | 7.65E-261 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 4.63E-179 | |
| TrEMBL | A0A4U6THK5 | Oligouridylate-binding protein 1B OS=Setaria viridis OX=4556 GN=SEVIR_8G206700v2 PE=4 SV=1 | 1.73E-259 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology