Basic Information
Locus ID:
BH04.2008
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 32657165 | 32660209 | - | BH04.2008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 44,609.37 Da | 37.17 | 75.19 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 65 | 316 | 3.33179E-66 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 66 | 322 | 1.7E-48 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 64 | 320 | 7.0E-53 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 379 | 423 | 3.25E-5 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 381 | 425 | 3.9E-8 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 62 | 334 | 9.5E-59 | - |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 187 | 193 | - | IPR019825 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10530.1 | Concanavalin A-like lectin protein kinase family protein. | 2.21E-24 |
| RefSeq | XP_039822073.1 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Panicum virgatum] | 2.6E-131 |
| P93248 | Bark leucoagglutinin (Fragment) OS=Maackia amurensis OX=37501 GN=MAL PE=2 SV=1 | 1.21E-23 | |
| TrEMBL | A0A8T0PCI7 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8NG280700 PE=3 SV=1 | 1.06E-172 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH04.1995, BH04.2001, BH04.2004, BH04.2007, BH04.2008 |
| Poaceae | Hordeum vulgare | 8 | HORVU.MOREX.r3.2HG0097640.1, HORVU.MOREX.r3.2HG0097720.1 ... |
| Poaceae | Lolium multiflorum | 15 | gene-QYE76_004354, gene-QYE76_004356, gene-QYE76_004362 ... |
| Poaceae | Oryza coarctata | 2 | Oco08G000910, Oco08G000950 |
| Poaceae | Oryza sativa | 16 | LOC_Os04g03370.1, LOC_Os04g03380.1, LOC_Os04g03530.1 ... |
| Poaceae | Paspalum vaginatum | 10 | gene-BS78_K006300, gene-BS78_K006400, gene-BS78_K006500 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0300137, Pt_Chr0402868, Pt_Chr0500818, Pt_Chr0500820 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G056800, Tel2E01G048600, Tel2E01G048700 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG001630, gene_TRIDC2BG001740 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2B02G007400.2, TraesCS2B02G008400.1 ... |