Basic Information
Locus ID:
BH04.2004
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 32610233 | 32613544 | - | BH04.2004 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 43,566.51 Da | 51.31 | 72.81 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 2 | 223 | 2.52748E-63 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 2 | 226 | 7.4E-52 | IPR001220 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 236 | 331 | 9.3E-6 | IPR001245 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 2 | 227 | 7.0E-56 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 222 | 349 | 9.04E-15 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 220 | 393 | 2.0E-7 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 1 | 219 | 4.4E-59 | - |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 110 | 116 | - | IPR019825 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 369 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55830.1 | Concanavalin A-like lectin protein kinase family protein. | 3.28E-20 |
| RefSeq | XP_004972637.1 | L-type lectin-domain containing receptor kinase IX.1 [Setaria italica] | 4.45E-95 |
| P93248 | Bark leucoagglutinin (Fragment) OS=Maackia amurensis OX=37501 GN=MAL PE=2 SV=1 | 3.87E-30 | |
| TrEMBL | A0A811QA47 | Protein kinase domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS39672 PE=3 SV=1 | 2.14E-119 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH04.1995, BH04.2001, BH04.2004, BH04.2007, BH04.2008 |
| Poaceae | Hordeum vulgare | 8 | HORVU.MOREX.r3.2HG0097640.1, HORVU.MOREX.r3.2HG0097720.1 ... |
| Poaceae | Lolium multiflorum | 15 | gene-QYE76_004354, gene-QYE76_004356, gene-QYE76_004362 ... |
| Poaceae | Oryza coarctata | 2 | Oco08G000910, Oco08G000950 |
| Poaceae | Oryza sativa | 16 | LOC_Os04g03370.1, LOC_Os04g03380.1, LOC_Os04g03530.1 ... |
| Poaceae | Paspalum vaginatum | 10 | gene-BS78_K006300, gene-BS78_K006400, gene-BS78_K006500 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0300137, Pt_Chr0402868, Pt_Chr0500818, Pt_Chr0500820 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G056800, Tel2E01G048600, Tel2E01G048700 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG001630, gene_TRIDC2BG001740 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2B02G007400.2, TraesCS2B02G008400.1 ... |