Basic Information
Locus ID:
BH04.1965
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 32120071 | 32124423 | - | BH04.1965 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 41,331.37 Da | 44.43 | 81.47 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 156 | 235 | 7.8E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 320 | 351 | 0.2 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 95 | 358 | 1.21E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 359 | 2.7E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 139 | 177 | 0.42 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 219 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 353 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 271 | 310 | 17.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 60 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 2.64E-86 |
| RefSeq | XP_039822374.1 | SEC12-like protein 2 isoform X2 [Panicum virgatum] | 1.43E-214 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 3.05E-83 | |
| TrEMBL | A0A8T0PKA2 | ANAPC4_WD40 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8NG345100 PE=4 SV=1 | 3.47E-213 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology