Basic Information
Locus ID:
BH04.1914
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 31600143 | 31605861 | - | BH04.1914 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 164,171.61 Da | 45.72 | 81.02 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 777 | 1016 | 4.94078E-46 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 784 | 1014 | 3.7E-26 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1260 | 1344 | 7.3E-26 | IPR026960 |
| Pfam | PF04434 | SWIM zinc finger | 373 | 397 | 6.8E-5 | IPR007527 |
| Pfam | PF03108 | MuDR family transposase | 100 | 164 | 9.6E-12 | IPR004332 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 703 | 988 | 3.78E-17 | IPR043502 |
| SMART | SM00575 | 26again6 | 378 | 405 | 5.7E-6 | IPR006564 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 371 | 403 | 9.61879 | IPR007527 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 764 | 1016 | 11.88897 | IPR000477 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 476 | 493 | 8.696716 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 635 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 521 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020149650.1 | uncharacterized protein LOC109734878 [Aegilops tauschii subsp. strangulata] | 8.58E-255 |
| P0C2F6 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1 | 1.66E-28 | |
| TrEMBL | A0A8T0UXP3 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3KG486263 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology