Basic Information
Locus ID:
BH04.1700
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the cytochrome P450 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 28813642 | 28828020 | + | BH04.1700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 249,042.48 Da | 41.53 | 79.80 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 458 | 552 | 2.75795E-11 | - |
| CDD | cd01647 | RT_LTR | 770 | 950 | 2.00561E-78 | - |
| CDD | cd09279 | RNase_HI_like | 1013 | 1090 | 5.80312E-27 | - |
| Pfam | PF14392 | Zinc knuckle | 1988 | 2033 | 6.7E-9 | IPR025836 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 1849 | 1985 | 4.7E-19 | IPR025558 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 788 | 950 | 6.0E-21 | IPR000477 |
| Pfam | PF00067 | Cytochrome P450 | 1386 | 1818 | 4.1E-50 | IPR001128 |
| Pfam | PF17921 | Integrase zinc binding domain | 1095 | 1143 | 2.3E-7 | IPR041588 |
| Pfam | PF13456 | Reverse transcriptase-like | 1017 | 1093 | 2.0E-11 | IPR002156 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 730 | 1091 | 3.22E-85 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 456 | 557 | 8.06E-8 | IPR021109 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1158 | 1264 | 3.22E-17 | IPR012337 |
| SUPERFAMILY | SSF48264 | Cytochrome P450 | 1380 | 1807 | 1.44E-78 | IPR036396 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 442 | 569 | 2.4E-15 | IPR021109 |
| Gene3D | G3DSA:3.30.420.10 | - | 1152 | 1207 | 5.4E-9 | IPR036397 |
| Gene3D | G3DSA:1.10.630.10 | Cytochrome P450 | 1374 | 1834 | 1.3E-95 | IPR036396 |
| Gene3D | G3DSA:3.30.420.10 | - | 1208 | 1299 | 3.0E-14 | IPR036397 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 731 | 875 | 6.7E-60 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1014 | 1120 | 4.8E-17 | IPR036397 |
| Gene3D | G3DSA:3.30.70.270 | - | 813 | 950 | 6.7E-60 | IPR043128 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 768 | 950 | 9.142104 | IPR000477 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1009 | 1149 | 9.111221 | IPR002156 |
| ProSitePatterns | PS00086 | Cytochrome P450 cysteine heme-iron ligand signature. | 1770 | 1779 | - | IPR017972 |
| PRINTS | PR00465 | E-class P450 group IV signature | 1761 | 1777 | 2.9E-20 | IPR002403 |
| PRINTS | PR00465 | E-class P450 group IV signature | 1777 | 1795 | 2.9E-20 | IPR002403 |
| PRINTS | PR00465 | E-class P450 group IV signature | 1735 | 1753 | 2.9E-20 | IPR002403 |
| PRINTS | PR00465 | E-class P450 group IV signature | 1405 | 1428 | 2.9E-20 | IPR002403 |
| PRINTS | PR00465 | E-class P450 group IV signature | 1681 | 1697 | 2.9E-20 | IPR002403 |
| PRINTS | PR00465 | E-class P450 group IV signature | 1623 | 1649 | 2.9E-20 | IPR002403 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2101 | 2125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2184 | 2220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2060 | 2220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2140 | 2154 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Reaction:
R05640 (Lanosterol + 3 [Reduced NADPH---hemoprotein reductase] + 3 Oxygen <=> 4,4-Dimethyl-5alpha-cholesta-8,14,24-trien-3beta-ol + Formate + 3 [Oxidized NADPH---hemoprotein reductase] + 4 H2O)
R05731 (Obtusifoliol + 3 [Reduced NADPH---hemoprotein reductase] + 3 Oxygen <=> 4alpha-Methyl-5alpha-ergosta-8,14,24(28)-trien-3beta-ol + Formate + 3 [Oxidized NADPH---hemoprotein reductase] + 4 H2O)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11680.1 | CYTOCHROME P450 51G1. putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis. | 2.57E-140 |
| RefSeq | XP_039777340.1 | obtusifoliol 14-alpha demethylase-like [Panicum virgatum] | 3.83E-210 |
| P93846 | Obtusifoliol 14-alpha demethylase OS=Sorghum bicolor OX=4558 GN=CYP51 PE=1 SV=1 | 4.8E-144 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |