Basic Information
Locus ID:
BH04.1581
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Transposase family tnp2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 26882941 | 26898144 | - | BH04.1581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 269,450.66 Da | 51.56 | 79.00 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02992 | Transposase family tnp2 | 436 | 580 | 5.1E-50 | IPR004242 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 764 | 870 | 7.7E-38 | IPR025452 |
| Pfam | PF13963 | Transposase-associated domain | 334 | 407 | 4.1E-16 | IPR029480 |
| Pfam | PF04535 | Domain of unknown function (DUF588) | 6 | 141 | 4.2E-19 | IPR006702 |
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 2143 | 2200 | 8.8E-5 | IPR003653 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2063 | 2215 | 5.1E-19 | IPR038765 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 2032 | 2221 | 2.7E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1003 | 1017 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1792 | 1917 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1865 | 1913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 998 | 1021 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1282 | 1318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1817 | 1846 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1944 | 1974 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1114 | 1128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1285 | 1310 | - | - |
| Coils | Coil | Coil | 1595 | 1629 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39518.1 | Uncharacterised protein family (UPF0497). | 1.33E-7 |
| RefSeq | XP_025882393.1 | uncharacterized protein LOC112939432 [Oryza sativa Japonica Group] | 6.76E-254 |
| Q2R2T4 | CASP-like protein 4D1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0549625 PE=3 SV=1 | 1.59E-22 | |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |