Basic Information
Locus ID:
BH04.1475
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 25545553 | 25546806 | + | BH04.1475 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 45,302.24 Da | 51.45 | 78.37 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 361 | 404 | 9.05944E-12 | - |
| Pfam | PF13639 | Ring finger domain | 361 | 404 | 1.2E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 360 | 409 | 2.23E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 348 | 412 | 1.5E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 361 | 403 | 0.0094 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 361 | 404 | 11.559839 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 346 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039824240.1 | uncharacterized protein LOC120686137 [Panicum virgatum] | 7.05E-103 |
| TrEMBL | K3ZM70 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_8G137900v2 PE=4 SV=1 | 2.41E-114 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||