Basic Information
Locus ID:
BH04.1474
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 25539157 | 25540281 | + | BH04.1474 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 39,399.51 Da | 68.03 | 72.38 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 320 | 361 | 1.06972E-10 | - |
| Pfam | PF13639 | Ring finger domain | 319 | 361 | 7.4E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 313 | 366 | 4.2E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 298 | 366 | 7.1E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 320 | 360 | 2.4E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 320 | 361 | 11.618851 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 89 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021317765.1 | uncharacterized protein LOC8064800 [Sorghum bicolor] | 7.37E-83 |
| TrEMBL | A0A3L6PKT5 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM18G08670 PE=4 SV=1 | 2.59E-114 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology