Basic Information
Locus ID:
BH04.1473
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 25530922 | 25532163 | + | BH04.1473 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 44,751.86 Da | 60.37 | 73.56 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 360 | 403 | 5.2207E-11 | - |
| Pfam | PF13639 | Ring finger domain | 360 | 403 | 4.9E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 353 | 407 | 6.42E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 356 | 407 | 1.1E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 360 | 402 | 6.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 360 | 403 | 11.427062 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039824240.1 | uncharacterized protein LOC120686137 [Panicum virgatum] | 9.4E-121 |
| TrEMBL | K3ZM70 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_8G137900v2 PE=4 SV=1 | 3.87E-125 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||