Basic Information
Locus ID:
BH04.1470
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 25496767 | 25511699 | + | BH04.1470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 113,765.27 Da | 35.01 | 83.07 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 40 | 317 | 1.62008E-177 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 358 | 449 | 1.7E-22 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 606 | 819 | 3.4E-43 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 41 | 353 | 1.2E-92 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 901 | 1007 | 1.5E-12 | IPR041147 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 463 | 1010 | 5.81E-137 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 358 | 456 | 7.52E-29 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 29 | 356 | 8.34E-108 | IPR011330 |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 867 | 2.1E-92 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 400 | 1.2E-31 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 401 | 457 | 1.9E-22 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 479 | 601 | 4.6E-29 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 40 | 321 | 1.3E-118 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 887 | 1014 | 1.7E-34 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 6.7E-25 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_025827081.1 | probable alpha-mannosidase At5g13980 [Panicum hallii] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3IEG9 | Alpha-mannosidase OS=Panicum hallii OX=206008 GN=PAHAL_8G192700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology