Basic Information
Locus ID:
BH04.1208
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 19557660 | 19568431 | - | BH04.1208 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 126,417.38 Da | 56.38 | 83.20 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 727 | 889 | 1.02992E-59 | - |
| Pfam | PF06337 | DUSP domain | 33 | 136 | 2.2E-22 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 316 | 888 | 1.5E-86 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 490 | 631 | 2.7E-8 | IPR029346 |
| SUPERFAMILY | SSF143791 | DUSP-like | 13 | 136 | 3.4E-26 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 314 | 891 | 1.04E-108 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 149 | 235 | 3.7E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 648 | 898 | 1.1E-57 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 304 | 538 | 1.1E-63 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 6 | 148 | 1.2E-34 | - |
| SMART | SM00695 | dusp | 29 | 138 | 1.7E-29 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 316 | 891 | 57.255444 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 10 | 135 | 19.026834 | IPR006615 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 833 | 850 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 317 | 332 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1068 | 1122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1103 | - | - |
| Coils | Coil | Coil | 206 | 226 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_025827282.1 | ubiquitin carboxyl-terminal hydrolase 5 [Panicum hallii] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3L6Q129 | Ubiquitin carboxyl-terminal hydrolase OS=Panicum miliaceum OX=4540 GN=C2845_PM17G08520 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology