Basic Information
Locus ID:
BH04.1196
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 19295684 | 19297173 | - | BH04.1196 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.84 | 40,928.83 Da | 63.38 | 60.97 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 325 | 366 | 5.5E-5 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 326 | 370 | 1.2E-7 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 311 | 371 | 4.8E-8 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 181 | 284 | 2.3E-6 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 324 | 366 | 10.971794 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 125 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 6.28E-45 |
| RefSeq | XP_034607107.1 | F-box protein At1g67340-like isoform X2 [Setaria viridis] | 3.67E-95 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 6.11E-44 | |
| TrEMBL | A0A4U6TSU9 | MYND-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_8G128500v2 PE=4 SV=1 | 8.31E-94 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology