Basic Information
Locus ID:
BH04.1170
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 18562292 | 18563751 | + | BH04.1170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 47,175.13 Da | 42.56 | 80.07 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 42 | 380 | 4.7E-58 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 40 | 384 | 5.04E-51 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 281 | 351 | 3.93E-14 | IPR029070 |
| Gene3D | G3DSA:3.10.50.10 | - | 280 | 351 | 1.3E-83 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 56 | 381 | 1.3E-83 | - |
| SMART | SM00636 | 2g34 | 39 | 380 | 8.6E-69 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 39 | 397 | 53.869873 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 4.62E-65 |
| RefSeq | XP_004979247.1 | chitinase-3-like protein 1 [Setaria italica] | 1.29E-268 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 1.43E-71 | |
| TrEMBL | A0A1E5UN95 | Chitinase-3-like protein 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0024628 PE=4 SV=1 | 1.65E-267 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology