Basic Information
Locus ID:
BH04.1050
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH04 | 15443411 | 15458734 | + | BH04.1050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 249,722.30 Da | 57.48 | 74.67 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00866 | PEBP_euk | 28 | 164 | 1.94485E-45 | IPR035810 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 935 | 1041 | 6.3E-38 | IPR025452 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 1195 | 1260 | 7.3E-14 | IPR025312 |
| Pfam | PF01161 | Phosphatidylethanolamine-binding protein | 52 | 161 | 2.7E-13 | IPR008914 |
| Pfam | PF02992 | Transposase family tnp2 | 538 | 751 | 3.3E-91 | IPR004242 |
| Pfam | PF13963 | Transposase-associated domain | 221 | 294 | 4.5E-18 | IPR029480 |
| SUPERFAMILY | SSF49777 | PEBP-like | 13 | 167 | 3.53E-48 | IPR036610 |
| Gene3D | G3DSA:3.90.280.10 | - | 2 | 170 | 2.4E-58 | IPR036610 |
| ProSitePatterns | PS01220 | Phosphatidylethanolamine-binding protein family signature. | 65 | 87 | - | IPR001858 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1467 | 1495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1592 | 1606 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1784 | 1875 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1827 | 1875 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1729 | 1750 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1803 | 1826 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1588 | 1615 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1262 | 1283 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65480.1 | PEBP (phosphatidylethanolamine-binding protein) family protein. FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1. | 3.14E-80 |
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| I1H0V9 | Protein VERNALIZATION 3 OS=Brachypodium distachyon OX=15368 GN=VRN3 PE=2 SV=1 | 5.76E-81 | |
| TrEMBL | Q75HF8 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g60010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |