Basic Information
Locus ID:
BH03.964
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DDE superfamily endonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 12265864 | 12271234 | - | BH03.964 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 69,084.87 Da | 69.25 | 61.67 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13359 | DDE superfamily endonuclease | 453 | 580 | 3.1E-19 | IPR027806 |
| SUPERFAMILY | SSF56770 | HydA/Nqo6-like | 578 | 614 | 3.01E-9 | - |
| Gene3D | G3DSA:3.40.50.12280 | - | 574 | 622 | 9.7E-13 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 174 | - | - |
| Coils | Coil | Coil | 374 | 394 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G30525.1 | - | 3.31E-24 |
| RefSeq | XP_025818423.1 | uncharacterized protein LOC112894820 isoform X2 [Panicum hallii] | 7.56E-71 |
| P42027 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Brassica oleracea OX=3712 PE=1 SV=1 | 6.63E-20 | |
| TrEMBL | A0A3L6PLM8 | Putative nuclease HARBI1 OS=Panicum miliaceum OX=4540 GN=C2845_PM14G09830 PE=3 SV=1 | 8.57E-51 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB03g058380.2N |
| Poaceae | Echinochloa crus-galli | 24 | AH01.4755, AH02.2722, AH04.1015, AH05.1286, AH05.1766 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0063290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0136190.1 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g46770.1 |
| Poaceae | Paspalum vaginatum | 13 | gene-BS78_01G057300, gene-BS78_02G211300, gene-BS78_K021000 ... |
| Poaceae | Sporobolus alterniflorus | 18 | Chr01G028140, Chr02G020120, Chr02G020680, Chr03G014060 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G440600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG030720, gene_TRIDC2AG037920 ... |
| Poaceae | Zea mays | 4 | Zm00001eb009750_P001, Zm00001eb012990_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21483 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10439 |