Basic Information
Locus ID:
BH03.908
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Transposase family tnp2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 11317414 | 11336062 | - | BH03.908 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 261,767.69 Da | 58.69 | 73.62 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02992 | Transposase family tnp2 | 240 | 375 | 2.7E-61 | IPR004242 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 534 | 640 | 6.7E-38 | IPR025452 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 775 | 840 | 1.5E-12 | IPR025312 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 906 | 988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1044 | 1069 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1124 | 1144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1631 | 1769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1653 | 1698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 863 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1717 | 1765 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2082 | 2102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1796 | 1824 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 942 | 973 | - | - |
| Coils | Coil | Coil | 1431 | 1465 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |