HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: BH03.698
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: gene silencing by RNA
Maps and Mapping Data
Chromosome Start End Strand ID
BH03 8655580 8660450 - BH03.698
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
10.84 68,825.67 Da 47.64 75.64 -0.42
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
MobiDBLite mobidb-lite consensus disorder prediction 359 383 - -
MobiDBLite mobidb-lite consensus disorder prediction 359 387 - -
MobiDBLite mobidb-lite consensus disorder prediction 120 145 - -
KEGG Pathway
KO Term:
K11593 (eukaryotic translation initiation factor 2C)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_039780653.1 uncharacterized protein LOC120647911 [Panicum virgatum] 7.08E-20
TrEMBL B8BK71 Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_35901 PE=4 SV=1 2.3E-27
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 37 AH01.187, AH01.1957, AH01.2177, AH01.3185, AH01.831 ...
AH02.1897, AH02.1960, AH02.460, AH05.1846, AH05.1852, AH07.2778, AH08.1152, AH09.346, AH09.582, BH01.2683, BH03.1603, BH03.1642, BH03.698, BH04.1205, BH05.2775, BH05.3844, BH05.891, BH05.893, BH07.1133, BH07.1134, BH07.1792, BH07.2366, BH08.2259, BH08.453, BH08.780, BH09.2496, BH09.455, BH09.614, CH02.1802, CH05.3928, CH08.1155, Contig1957.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.