Basic Information
Locus ID:
BH03.65
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 507244 | 527734 | + | BH03.65 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 129,142.00 Da | 52.42 | 78.06 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1018 | 1123 | 2.60305E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 428 | 781 | 1.45736E-78 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 897 | 933 | 8.9E-7 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 440 | 858 | 1.3E-67 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1015 | 1113 | 2.4E-13 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 413 | 781 | 1.72E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 791 | 1170 | 1.15E-54 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 892 | 939 | 5.2E-11 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 550 | 644 | 4.3E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 888 | 948 | 1.1E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 398 | 487 | 3.6E-12 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 651 | 782 | 2.4E-27 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 796 | 1171 | 2.0E-63 | IPR027417 |
| SMART | SM00490 | helicmild6 | 1030 | 1113 | 7.8E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 424 | 758 | 2.0E-25 | IPR014001 |
| SMART | SM00184 | ring_2 | 897 | 935 | 0.0018 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 570 | 743 | 12.263268 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1000 | 1166 | 13.431837 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 897 | 936 | 10.881201 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 912 | 921 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 674 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 288 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 1.09E-287 |
| RefSeq | XP_004957553.1 | helicase-like transcription factor CHR28 isoform X1 [Setaria italica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 1.04E-286 | |
| TrEMBL | A0A368Q4H2 | Helicase-like transcription factor CHR28 OS=Setaria italica OX=4555 GN=SETIT_2G297900v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology