Basic Information
Locus ID:
BH03.628
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
E3 ubiquitin- protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 7703323 | 7708488 | + | BH03.628 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.08 | 88,321.08 Da | 72.55 | 76.08 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 772 | 805 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 431 | - | - |
| Coils | Coil | Coil | 738 | 776 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022680424.1 | uncharacterized protein LOC101782772 [Setaria italica] | 2.32E-116 |
| TrEMBL | A0A4U6VNV7 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G061500v2 PE=4 SV=1 | 5.7E-114 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.415, BH03.506, BH03.628, CH03.594 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G057100 |
| Poaceae | Zea mays | 1 | Zm00001eb301580_P002 |