Basic Information
Locus ID:
BH03.507
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
histone H2A-K119 monoubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 6415362 | 6419595 | - | BH03.507 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 24,686.71 Da | 55.95 | 80.21 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 128 | 2.9E-9 | IPR013083 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.3 | - | 2.82E-16 |
| RefSeq | XP_022679800.1 | plectin-like isoform X3 [Setaria italica] | 3.97E-43 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 4.23E-15 | |
| TrEMBL | A0A368PVQ3 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G058800v2 PE=4 SV=1 | 7.22E-42 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25168, Sbi_jg9010 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19581 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42444, Sgl47173 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12630.v2.2 |
| Poaceae | Echinochloa crus-galli | 1 | BH03.507 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20398, nbis-gene-39672, nbis-gene-39673 |