Basic Information
Locus ID:
BH03.506
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
E3 ubiquitin- protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 6402623 | 6405415 | - | BH03.506 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 54,450.04 Da | 58.09 | 80.45 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 59 | 126 | 7.78E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 153 | 2.5E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 65 | 105 | 9.405901 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| Coils | Coil | Coil | 335 | 412 | - | - |
| Coils | Coil | Coil | 434 | 468 | - | - |
| Coils | Coil | Coil | 302 | 322 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06770.3 | - | 7.67E-25 |
| RefSeq | XP_022680424.1 | uncharacterized protein LOC101782772 [Setaria italica] | 5.36E-194 |
| Q9M9Y4 | E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana OX=3702 GN=DRIP1 PE=1 SV=2 | 9.65E-24 | |
| TrEMBL | A0A4U6VNV7 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G061500v2 PE=4 SV=1 | 1.4E-191 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.415, BH03.506, BH03.628, CH03.594 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G057100 |
| Poaceae | Zea mays | 1 | Zm00001eb301580_P002 |