Basic Information
Locus ID:
BH03.502
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 6347463 | 6350983 | - | BH03.502 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 67,865.37 Da | 49.51 | 91.62 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 13 | 53 | 1.5E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 9 | 64 | 7.78E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 101 | 7.7E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 13 | 53 | 3.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 13 | 53 | 10.48287 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 29 | 38 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 263 | - | - |
| Coils | Coil | Coil | 394 | 421 | - | - |
| Coils | Coil | Coil | 457 | 484 | - | - |
| Coils | Coil | Coil | 271 | 308 | - | - |
| Coils | Coil | Coil | 362 | 382 | - | - |
| Coils | Coil | Coil | 334 | 354 | - | - |
| Coils | Coil | Coil | 425 | 449 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.3 | - | 8.02E-23 |
| RefSeq | XP_039799086.1 | uncharacterized protein LOC120664125 isoform X1 [Panicum virgatum] | 1.14E-49 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 2.21E-21 | |
| TrEMBL | A0A5J9W211 | TACC_C domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_15465 PE=4 SV=1 | 1.02E-66 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH03.413, BH03.502, CH03.588 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G056800 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr28G002050 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4822 |