Basic Information
Locus ID:
BH03.456
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 5804648 | 5807707 | + | BH03.456 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.91 | 70,921.45 Da | 53.41 | 85.48 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 197 | 239 | 6.2E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 195 | 237 | 1.7E-12 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 198 | 511 | 3.4E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 345 | 633 | 4.5E-6 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 190 | 237 | 2.0E-7 | - |
| SMART | SM00256 | fbox_2 | 200 | 240 | 3.8E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 194 | 253 | 10.424773 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 73 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18150.1 | RNI-like superfamily protein. | 2.93E-7 |
| RefSeq | XP_044333065.1 | FBD-associated F-box protein At5g60610-like isoform X1 [Triticum aestivum] | 1.33E-149 |
| Q84W80 | F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana OX=3702 GN=At3g03360 PE=2 SV=2 | 1.42E-7 | |
| TrEMBL | A0A368PW99 | F-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G051600v2 PE=4 SV=1 | 8.48E-186 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH03.377, BH03.456, CH03.533 |
| Poaceae | Oryza coarctata | 2 | Oco13G009720, Oco14G010320 |
| Poaceae | Oryza sativa | 3 | LOC_Os07g36790.1, LOC_Os07g36890.1, LOC_Os07g36900.1 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG048940, gene_TRIDC2BG051540 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G327500.1, TraesCS2B02G354500.1 ... |