Basic Information
Locus ID:
BH03.4489
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 52254747 | 52259159 | + | BH03.4489 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 98,998.11 Da | 47.52 | 85.80 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 388 | 544 | 3.95873E-81 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 777 | 883 | 6.9E-9 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 385 | 550 | 6.5E-30 | IPR012001 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 160 | 308 | 1.3E-11 | IPR001245 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 777 | 902 | 4.29E-23 | IPR029061 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 132 | 306 | 3.27E-20 | IPR011009 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 385 | 558 | 1.08E-39 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 572 | 710 | 2.91E-17 | IPR029035 |
| Gene3D | G3DSA:3.40.50.970 | - | 382 | 553 | 3.4E-54 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 568 | 711 | 1.3E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 230 | 331 | 6.5E-9 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 773 | 897 | 7.3E-30 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 125 | 229 | 8.3E-13 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 147 | 554 | 9.078988 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 722 | 762 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 2.34E-242 |
| RefSeq | XP_004958794.1 | pyruvate decarboxylase 2 [Setaria italica] | 2.46E-284 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 1.97E-260 | |
| TrEMBL | K4A1P9 | pyruvate decarboxylase OS=Setaria italica OX=4555 GN=101785721 PE=3 SV=1 | 5.56E-283 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology