Basic Information
Locus ID:
BH03.4349
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 51097779 | 51101905 | + | BH03.4349 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 75,417.76 Da | 37.80 | 85.20 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 14 | 611 | 1.73E-22 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 386 | 6.6E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 393 | 624 | 8.8E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 526 | 566 | 0.59 | IPR001680 |
| SMART | SM00320 | WD40_4 | 569 | 610 | 55.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 378 | 42.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 380 | 427 | 96.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 87 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 127 | 300.0 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 3.79E-44 |
| RefSeq | XP_040382279.1 | autophagy-related protein 18a-like [Oryza brachyantha] | 2.09E-54 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 3.69E-43 | |
| TrEMBL | A0A4U6W1W0 | WD_REPEATS_REGION domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G438500v2 PE=4 SV=1 | 3.47E-70 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.2345, BH03.4349, BH03.4350, CH07.167 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0244420, gene-QOZ80_3BG0283610 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G137700 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr24G012750 |