Basic Information
Locus ID:
BH03.4279
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Uncharacterized protein K02A2.6-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 50305080 | 50315685 | + | BH03.4279 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 179,898.69 Da | 42.72 | 77.65 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 870 | 1050 | 2.39774E-79 | - |
| CDD | cd00303 | retropepsin_like | 552 | 629 | 9.41635E-6 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1115 | 1184 | 7.8E-16 | IPR041577 |
| Pfam | PF00665 | Integrase core domain | 1415 | 1518 | 5.7E-8 | IPR001584 |
| Pfam | PF17921 | Integrase zinc binding domain | 1347 | 1396 | 1.5E-6 | IPR041588 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 888 | 1050 | 2.3E-21 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 830 | 1205 | 2.56E-113 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1414 | 1538 | 1.39E-23 | IPR012337 |
| Gene3D | G3DSA:1.10.340.70 | - | 1306 | 1395 | 1.6E-12 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 1060 | 1143 | 1.2E-20 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 913 | 1050 | 4.3E-61 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 532 | 642 | 2.8E-10 | IPR021109 |
| Gene3D | G3DSA:3.10.20.370 | - | 1144 | 1195 | 4.8E-7 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 831 | 975 | 4.3E-61 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1494 | 1552 | 5.2E-7 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 1405 | 1493 | 6.1E-21 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 1411 | 1492 | 11.938624 | IPR001584 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 868 | 1050 | 8.978112 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1249 | 1287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1249 | 1279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 729 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 709 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052161258.1 | uncharacterized protein LOC127778677 isoform X1 [Oryza glaberrima] | 2.02E-251 |
| P0CT41 | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1 | 1.16E-49 | |
| TrEMBL | Q2QTQ7 | Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g18840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |