Basic Information
Locus ID:
BH03.4231
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
protein dimerization activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 49552440 | 49555578 | + | BH03.4231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 91,685.87 Da | 57.53 | 74.92 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08879 | WRC | 563 | 598 | 8.3E-13 | IPR014977 |
| Pfam | PF08879 | WRC | 630 | 669 | 9.2E-13 | IPR014977 |
| SUPERFAMILY | SSF81383 | F-box domain | 159 | 235 | 1.28E-7 | IPR036047 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 162 | 210 | 9.550458 | IPR001810 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 629 | 673 | 20.176674 | IPR014977 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 725 | 771 | 9.627196 | IPR001841 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 562 | 606 | 19.85442 | IPR014977 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 142 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17540.1 | F-box and associated interaction domains-containing protein. | 6.13E-7 |
| RefSeq | XP_034579699.1 | uncharacterized protein LOC117843240 [Setaria viridis] | 8.57E-213 |
| Q9LUP4 | Putative F-box/kelch-repeat protein At3g17540 OS=Arabidopsis thaliana OX=3702 GN=At3g17540 PE=4 SV=1 | 6.08E-6 | |
| TrEMBL | A0A4U6W3Y0 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G429200v2 PE=4 SV=1 | 1.94E-211 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_06G010020, COCNU_14G006700 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714750, gene-LOC103724011 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.868.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g00140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g28940 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.3344, AH03.3939, BH03.3531, BH03.4231, CH03.3740 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0572320, gene-QOZ80_7BG0603800 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0135860.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_040264 |
| Poaceae | Oryza coarctata | 2 | Oco13G009860, Oco14G010510 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g37140.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G312900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304293, Pt_Chr0304340 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G004580, Chr24G009860, Chr27G012740, Chr28G009210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G388900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG026830, gene_TRIDC2BG031270 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G207000.1, TraesCS2B02G234100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb106740_P001, Zm00001eb323940_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10645, nbis-gene-56244, nbis-gene-726 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5336, Zma_g6641 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g00430 |
| Salicaceae | Populus euphratica | 1 | populus_peu18286 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20610.v3.1 |