halophFGD

Basic Information

Locus ID: BH03.4019

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: 40S ribosomal protein S6

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH03	48064060	48068341	+	BH03.4019

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.31	36,731.28 Da	39.51	73.67	-0.86

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01092	Ribosomal protein S6e	1	128	2.2E-55	IPR001377
Pfam	PF04135	Nucleolar RNA-binding protein, Nop10p family	258	307	2.0E-18	IPR007264
SUPERFAMILY	SSF144210	Nop10-like SnoRNP	258	313	1.96E-19	IPR036756
Gene3D	G3DSA:1.20.5.2650	-	133	234	2.3E-38	-
Gene3D	G3DSA:2.20.28.40	H/ACA ribonucleoprotein complex, subunit Nop10	265	309	2.7E-13	-
SMART	SM01405	Ribosomal_S6e_2	1	128	6.1E-81	IPR001377
ProSitePatterns	PS00578	Ribosomal protein S6e signature.	52	63	-	IPR018282
Coils	Coil	Coil	189	216	-	-

Gene Ontology

Biological Process:

GO:0001522 (pseudouridine synthesis) GO:0006412 (translation) GO:0042254 (ribosome biogenesis)

Molecular Function:

GO:0003735 (structural constituent of ribosome) GO:0030515 (snoRNA binding)

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K02991 (small subunit ribosomal protein S6e)

Pathway:

ko01521 (EGFR tyrosine kinase inhibitor resistance) map01521 (EGFR tyrosine kinase inhibitor resistance) ko03010 (Ribosome) map03010 (Ribosome) ko04066 (HIF-1 signaling pathway) map04066 (HIF-1 signaling pathway) ko04150 (mTOR signaling pathway) map04150 (mTOR signaling pathway) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G10360.1	Ribosomal protein S6e. RPS6A and RPS6B are fully redundant and essential during gametogenesis.	1.44E-130
RefSeq	XP_004958354.1	40S ribosomal protein S6 [Setaria italica]	9.51E-138
Swiss-Prot	Q9M3V8	Small ribosomal subunit protein eS6 OS=Asparagus officinalis OX=4686 GN=rps6 PE=2 SV=1	1.05E-129
TrEMBL	K3ZWC0	40S ribosomal protein S6 OS=Setaria italica OX=4555 GN=101782633 PE=3 SV=1	2.15E-136

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17043, jg20088, jg31102, jg39531
Aizoaceae	Mesembryanthemum crystallinum	1	gene_1449
Amaranthaceae	Atriplex hortensis	1	Ah023829
Amaranthaceae	Beta vulgaris	2	BVRB_1g008640, BVRB_1g008960
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg29357, Sbi_jg29358, Sbi_jg3585
Amaranthaceae	Salicornia europaea	2	Seu_jg6369, Seu_jg6370
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000819, GOSA_00000837
Amaranthaceae	Suaeda glauca	5	Sgl11181, Sgl16580, Sgl45773, Sgl45812, Sgl50517
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000013772, gene:ENSEOMG00000034060 ... gene:ENSEOMG00000049024
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.1AG0011500, CQ.Regalona.r1.1BG0014460
Anacardiaceae	Pistacia vera	2	pistato.v30102990, pistato.v30203350
Apiaceae	Apium graveolens	2	Ag3G01015, Ag7G01473
Arecaceae	Cocos nucifera	3	COCNU_05G005690, COCNU_13G003310, scaffold001962G000100
Arecaceae	Phoenix dactylifera	4	gene-LOC103698471, gene-LOC103701774, gene-LOC103707954 ... gene-LOC103717963
Asparagaceae	Asparagus officinalis	4	AsparagusV1_03.1020.V1.1, AsparagusV1_03.1836.V1.1 ... AsparagusV1_03.293.V1.1, AsparagusV1_07.2800.V1.1
Asteraceae	Flaveria trinervia	3	Ftri16G11660, Ftri18G22432, Ftri6G05533
Brassicaceae	Arabidopsis thaliana	2	AT4G31700.1, AT5G10360.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10014497m.g.v1.0, Thhalv10026073m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g33090.v2.2, Sp7g29500.v2.2
Brassicaceae	Brassica nigra	5	BniB02g051580.2N, BniB03g010290.2N, BniB05g006270.2N ... BniB05g026730.2N, BniB08g004800.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1316, Ceq06G1962
Casuarinaceae	Casuarina glauca	3	Cgl03G1418, Cgl06G2054, Cgl06G2071
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g02570, gene.Cymno03g12150
Dunaliellaceae	Dunaliella salina	1	Dusal.0276s00013.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g12270, gene.Thate05g11250
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10149, nbisL1-mrna-6745
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2470, evm.TU.LG08.1273
Plantaginaceae	Plantago ovata	3	Pov_00019055, Pov_00021994, Pov_00033518
Plumbaginaceae	Limonium bicolor	3	Lb1G05885, Lb3G20419, Lb5G27883
Poaceae	Echinochloa crus-galli	7	AH03.3741, AH05.3492, AH09.1990, BH03.4019, BH05.3498 ... CH03.4289, CH05.3641
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0390510, gene-QOZ80_5BG0437950 ... gene-QOZ80_7AG0577710, gene-QOZ80_7BG0609040
Poaceae	Lolium multiflorum	3	gene-QYE76_037264, gene-QYE76_039503, gene-QYE76_067518
Poaceae	Oryza coarctata	4	Oco05G015050, Oco06G015480, Oco13G013020, Oco14G013730
Poaceae	Oryza sativa	2	LOC_Os03g27260.1, LOC_Os07g42950.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G354600, gene-BS78_04G289600
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0502981, Pt_Chr0603286
Poaceae	Sporobolus alterniflorus	6	Chr04G015360, Chr06G015960, Chr19G002020, Chr24G015010 ... Chr27G015210, Chr28G011960
Poaceae	Thinopyrum elongatum	3	Tel2E01G147600, Tel2E01G147700, Tel2E01G323200
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG007270, gene_TRIDC2AG007320 ... gene_TRIDC2AG020690, gene_TRIDC2BG008450, gene_TRIDC2BG008460, gene_TRIDC2BG024590
Poaceae	Triticum aestivum	9	TraesCS2A02G066100.1, TraesCS2A02G066200.1 ... TraesCS2A02G163700.1, TraesCS2B02G078200.1, TraesCS2B02G078300.1, TraesCS2B02G189500.1, TraesCS2D02G064500.1, TraesCS2D02G064600.1, TraesCS2D02G170600.1
Poaceae	Zea mays	4	Zm00001eb109610_P001, Zm00001eb159700_P001 ... Zm00001eb327790_P002, Zm00001eb363770_P001
Poaceae	Zoysia japonica	3	nbis-gene-32978, nbis-gene-339, nbis-gene-36799
Poaceae	Zoysia macrostachya	3	Zma_g25066, Zma_g5576, Zma_g6879
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.1815, evm.TU.LG06.555
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g22790, gene.Posoc02g29630, gene.Posoc04g16110
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_6_RagTag.1689, evm.TU.Scaffold_7_RagTag.977 ... evm.TU.Scaffold_8_RagTag.761
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-18987, nbisL1-mrna-9484
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10875, nbisL1-mrna-18030, nbisL1-mrna-19867
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12078, nbisL1-mrna-20489, nbisL1-mrna-6807
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000002l.743, evm.TU.utg000011l.1023 ... evm.TU.utg000018l.511
Rhizophoraceae	Kandelia obovata	3	Maker00003635, Maker00007236, Maker00010699
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-13679, nbisL1-mrna-2995, nbisL1-mrna-8227
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-20305, nbisL1-mrna-3581
Salicaceae	Populus euphratica	7	populus_peu01411, populus_peu04508, populus_peu13742 ... populus_peu13743, populus_peu14587, populus_peu22901, populus_peu32240
Solanaceae	Lycium barbarum	3	gene-LOC132604271, gene-LOC132609561, gene-LOC132635582
Solanaceae	Solanum chilense	3	SOLCI001266200, SOLCI004789300, SOLCI005424400
Solanaceae	Solanum pennellii	3	gene-LOC107007396, gene-LOC107028817, gene-LOC107028861
Tamaricaceae	Reaumuria soongarica	4	STRG.10072_chr06_+, STRG.22643_chr10_+, STRG.26405_chr11_+ ... gene_16034
Tamaricaceae	Tamarix chinensis	2	TC03G1608, TC09G1783
Zosteraceae	Zostera marina	3	Zosma01g29500.v3.1, Zosma01g29530.v3.1, Zosma03g23900.v3.1