Basic Information
Locus ID:
BH03.3987
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 47879736 | 47884546 | + | BH03.3987 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 78,670.13 Da | 37.79 | 85.50 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 426 | 693 | 7.4E-39 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 74 | 2.1E-8 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 123 | 182 | 2.0E-10 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 248 | 3.44E-39 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 402 | 693 | 3.05E-67 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 383 | 499 | 6.1E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 262 | 4.7E-48 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 500 | 715 | 5.8E-54 | - |
| SMART | SM00369 | LRR_typ_2 | 169 | 192 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 99 | 124 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 146 | 168 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 193 | 217 | 410.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 148 | 169 | 7.465533 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 422 | 696 | 34.74633 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 428 | 451 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 5.6E-207 |
| RefSeq | XP_004958321.1 | protein STRUBBELIG-RECEPTOR FAMILY 7 [Setaria italica] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 5.39E-206 | |
| TrEMBL | K3ZR40 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101769828 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology