Basic Information
Locus ID:
BH03.3927
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 47361940 | 47365001 | + | BH03.3927 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.27 | 42,585.08 Da | 68.17 | 86.00 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 45 | 79 | 4.0E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 44 | 86 | 7.85E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 37 | 82 | 2.8E-6 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 43 | 90 | 10.716211 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 314 | - | - |
| Coils | Coil | Coil | 102 | 122 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49030.2 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 6.26E-8 |
| RefSeq | XP_052159788.1 | uncharacterized protein LOC127777254 [Oryza glaberrima] | 4.22E-115 |
| Q9SMU0 | Putative F-box/FBD/LRR-repeat protein At3g49030 OS=Arabidopsis thaliana OX=3702 GN=At3g49030 PE=4 SV=1 | 6.52E-7 | |
| TrEMBL | I1NQ90 | F-box domain-containing protein OS=Oryza glaberrima OX=4538 PE=4 SV=1 | 9.54E-114 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH03.1194, BH03.3927 |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G026600, Tel5E01G026700, Tel5E01G026800 ... |