Basic Information
Locus ID:
BH03.3919
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 47313554 | 47316118 | + | BH03.3919 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 17,368.44 Da | 61.31 | 71.91 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 145 | 3.37435E-74 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 144 | 8.0E-53 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 2 | 150 | 4.33E-63 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 2 | 149 | 9.0E-68 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 150 | 1.0E-69 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 150 | 60.880241 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 77 | 92 | - | IPR023313 |
| Coils | Coil | Coil | 127 | 147 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 1.08E-108 |
| RefSeq | XP_021318749.1 | ubiquitin-conjugating enzyme E2 2 [Sorghum bicolor] | 3.88E-110 |
| P25866 | Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum OX=4565 GN=UBC2 PE=1 SV=1 | 5.33E-110 | |
| TrEMBL | B4FH08 | Ubiquitin-conjugating enzyme E2 2 OS=Zea mays OX=4577 GN=100193988 PE=2 SV=1 | 8.78E-109 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology