Basic Information
Locus ID:
BH03.389
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 4976962 | 4988738 | - | BH03.389 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 130,917.75 Da | 40.16 | 78.14 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 198 | 526 | 8.49498E-164 | - |
| CDD | cd00121 | MATH | 57 | 180 | 1.70255E-36 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 625 | 877 | 4.8E-74 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 200 | 521 | 1.3E-46 | IPR001394 |
| Pfam | PF00917 | MATH domain | 62 | 182 | 1.1E-17 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 887 | 1093 | 1.2E-57 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 195 | 552 | 4.71E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 57 | 190 | 1.49E-39 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 55 | 196 | 4.1E-50 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 197 | 525 | 1.6E-88 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 803 | 900 | 2.0E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 686 | 801 | 1.1E-40 | - |
| SMART | SM00061 | math_3 | 57 | 161 | 1.3E-17 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 200 | 524 | 39.788551 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 55 | 180 | 36.192894 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 440 | 457 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 201 | 216 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| Coils | Coil | Coil | 537 | 564 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_025800317.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Panicum hallii] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2S3GVP5 | ubiquitinyl hydrolase 1 OS=Panicum hallii OX=206008 GN=PAHAL_2G034000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology