halophFGD

Basic Information

Locus ID: BH03.3887

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: RING-type zinc-finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH03	47111740	47112315	+	BH03.3887

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.78	19,869.42 Da	47.38	70.94	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16454	RING-H2_PA-TM-RING	123	166	9.32467E-23	-
Pfam	PF13639	Ring finger domain	124	166	5.9E-14	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	123	172	4.08E-22	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	86	170	7.8E-22	IPR013083
SMART	SM00184	ring_2	124	165	9.8E-9	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	124	166	13.315446	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	70	84	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	64	84	-	-

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G06490.1	RING/U-box superfamily protein.	1.81E-44
RefSeq	XP_025797104.1	putative RING-H2 finger protein ATL71 [Panicum hallii]	1.03E-117
Swiss-Prot	Q9FG21	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1	1.75E-43
TrEMBL	A0A2T7C005	RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G057500 PE=4 SV=1	2.32E-116

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg14391, jg14393, jg15165, jg1961, jg26920, jg29398, jg29583 ... jg3675
Aizoaceae	Mesembryanthemum crystallinum	8	gene_11439, gene_12455, gene_16213, gene_17131, gene_2317 ... gene_3287, gene_3288, gene_3289
Amaranthaceae	Atriplex hortensis	7	Ah008151, Ah018652, Ah018668, Ah018670, Ah018676, Ah022930 ... Ah032276
Amaranthaceae	Beta vulgaris	3	BVRB_1g003920, BVRB_2g042080, BVRB_4g087040
Amaranthaceae	Salicornia bigelovii	16	Sbi_jg15111, Sbi_jg15112, Sbi_jg15116, Sbi_jg15117 ... Sbi_jg15750, Sbi_jg18665, Sbi_jg30063, Sbi_jg37103, Sbi_jg4054, Sbi_jg43491, Sbi_jg49249, Sbi_jg55944, Sbi_jg55948, Sbi_jg55949, Sbi_jg55951, Sbi_jg56542
Amaranthaceae	Salicornia europaea	7	Seu_jg13760, Seu_jg18411, Seu_jg26424, Seu_jg26427 ... Seu_jg26429, Seu_jg4920, Seu_jg5991
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00000509, GOSA_00001841, GOSA_00004179, GOSA_00006874 ... GOSA_00020032, GOSA_00020034, GOSA_00020039
Amaranthaceae	Suaeda glauca	21	Sgl01378, Sgl01380, Sgl01383, Sgl06452, Sgl06454, Sgl06459 ... Sgl06533, Sgl06534, Sgl06536, Sgl06541, Sgl06542, Sgl11009, Sgl16417, Sgl23160, Sgl28254, Sgl51457, Sgl56744, Sgl66187, Sgl66188, Sgl70502, Sgl70503
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000007019, gene:ENSEOMG00000012803 ... gene:ENSEOMG00000020208, gene:ENSEOMG00000021037, gene:ENSEOMG00000031067, gene:ENSEOMG00000034000, gene:ENSEOMG00000043597, gene:ENSEOMG00000046925
Amaranthaceae	Chenopodium quinoa	14	CQ.Regalona.r1.1AG0003510, CQ.Regalona.r1.2AG0004810 ... CQ.Regalona.r1.2BG0005020, CQ.Regalona.r1.2BG0025450, CQ.Regalona.r1.3AG0004670, CQ.Regalona.r1.3AG0004680, CQ.Regalona.r1.3AG0004700, CQ.Regalona.r1.3BG0004750, CQ.Regalona.r1.3BG0004760, CQ.Regalona.r1.4AG0009150, CQ.Regalona.r1.4BG0009250, CQ.Regalona.r1.4BG0020130, CQ.Regalona.r1.5AG0011340, CQ.Regalona.r1.5BG0011780
Apiaceae	Apium graveolens	5	Ag10G02108, Ag1G00217, Ag4G01406, Ag6G00017, Ag6G00208
Arecaceae	Cocos nucifera	4	COCNU_12G004880, scaffold000873G000030 ... scaffold000873G000040, scaffold000873G000050
Arecaceae	Phoenix dactylifera	6	gene-LOC103705104, gene-LOC103706328, gene-LOC103710922 ... gene-LOC103715722, gene-LOC103715724, gene-LOC103722244
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.1802.V1.1, AsparagusV1_Unassigned.1205.V1.1
Asteraceae	Flaveria trinervia	10	Ftri11G25735, Ftri12G12351, Ftri15G22498, Ftri17G01274 ... Ftri17G22010, Ftri17G24110, Ftri6G05573, Ftri6G07481, Ftri6G20931, Ftri6G29368
Brassicaceae	Arabidopsis thaliana	6	AT2G35910.1, AT2G46160.1, AT2G46493.1, AT3G61550.1 ... AT5G06490.1, AT5G07040.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10000707m.g.v1.0, Thhalv10001804m.g.v1.0 ... Thhalv10006504m.g.v1.0, Thhalv10014903m.g.v1.0, Thhalv10015385m.g.v1.0, Thhalv10017882m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp4g18160.v2.2, Sp4g28220.v2.2, Sp5g01860.v2.2 ... Sp6g35840.v2.2, Sp6g36370.v2.2
Brassicaceae	Brassica nigra	10	BniB01g001020.2N, BniB01g008520.2N, BniB02g053810.2N ... BniB02g054310.2N, BniB05g028790.2N, BniB06g000030.2N, BniB06g008170.2N, BniB06g061950.2N, BniB08g022610.2N, BniB08g075660.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq02G2450, Ceq04G1232, Ceq05G0937, Ceq08G1628, Ceq08G1629 ... Ceq08G1631
Casuarinaceae	Casuarina glauca	6	Cgl04G1393, Cgl04G1395, Cgl05G0936, Cgl08G1668, Cgl08G1670 ... Cgl08G1671
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno01g12210, gene.Cymno05g14710, gene.Cymno06g03020 ... gene.Cymno16g02840, gene.Cymno18g02000
Dunaliellaceae	Dunaliella salina	1	Dusal.2530s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g09750, gene.Thate02g25480, gene.Thate03g04670
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-2815, nbisL1-mrna-8720, nbisL1-mrna-9519
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1890, evm.TU.LG02.2041
Plantaginaceae	Plantago ovata	9	Pov_00003333, Pov_00003653, Pov_00016590, Pov_00016592 ... Pov_00016594, Pov_00016668, Pov_00027462, Pov_00034340, Pov_00040179
Plumbaginaceae	Limonium bicolor	5	Lb1G01421, Lb3G19296, Lb3G19298, Lb4G22066, Lb4G25399
Poaceae	Echinochloa crus-galli	23	AH01.145, AH02.3094, AH03.275, AH05.137, AH05.1663, BH03.353 ... AH05.4099, AH05.4100, BH02.3171, BH03.3887, BH05.161, BH05.1808, BH05.4197, BH05.4198, BH05.4199, CH01.461, CH03.426, CH04.1060, CH04.232, CH05.217, CH05.4425, CH05.4426, CH08.542
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_1AG0032330, gene-QOZ80_1BG0082550 ... gene-QOZ80_3BG0258420, gene-QOZ80_5AG0365850, gene-QOZ80_5AG0398440, gene-QOZ80_5AG0398460, gene-QOZ80_5BG0413660, gene-QOZ80_5BG0447090, gene-QOZ80_5BG0447100, gene-QOZ80_7AG0556110, gene-QOZ80_7BG0587050
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.1HG0081130.1.CDS1 ... HORVU.MOREX.r3.1HG0082750.1.CDS1, HORVU.MOREX.r3.3HG0287270.1.CDS1, HORVU.MOREX.r3.5HG0426000.1.CDS1, HORVU.MOREX.r3.5HG0426030.1.CDS1, HORVU.MOREX.r3.5HG0426040.1.CDS1, HORVU.MOREX.r3.5HG0461790.1.CDS1, HORVU.MOREX.r3.5HG0517100.1.CDS1
Poaceae	Lolium multiflorum	16	gene-QYE76_001044, gene-QYE76_001066, gene-QYE76_001067 ... gene-QYE76_001068, gene-QYE76_001071, gene-QYE76_001155, gene-QYE76_001161, gene-QYE76_001162, gene-QYE76_001163, gene-QYE76_001165, gene-QYE76_001170, gene-QYE76_001192, gene-QYE76_003312, gene-QYE76_016053, gene-QYE76_042562, gene-QYE76_055373
Poaceae	Oryza coarctata	7	Oco01G019720, Oco02G020070, Oco05G025570, Oco09G014760 ... Oco10G014720, Oco22G001420, Oco23G010740
Poaceae	Oryza sativa	7	LOC_Os01g53500.1, LOC_Os03g57410.1, LOC_Os05g45060.1 ... LOC_Os07g06540.1, LOC_Os07g06560.1, LOC_Os12g42530.1, LOC_Os12g42540.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G056400, gene-BS78_02G038800 ... gene-BS78_03G268500, gene-BS78_08G152800, gene-BS78_08G152900, gene-BS78_08G153100, gene-BS78_09G209100
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0105312, Pt_Chr0105313, Pt_Chr0602152, Pt_Chr0602556 ... Pt_Chr0704568, Pt_Chr0704924, Pt_Chr0704925, Pt_Chr0704926, Pt_Chr0704929
Poaceae	Sporobolus alterniflorus	19	Chr02G010280, Chr03G015660, Chr04G019400, Chr04G019410 ... Chr04G019420, Chr04G030160, Chr05G023120, Chr06G020210, Chr06G020220, Chr07G021690, Chr07G022420, Chr07G029240, Chr08G015740, Chr12G035360, Chr18G014440, Chr19G007400, Chr22G003130, Chr24G001280, Chr31G000670
Poaceae	Thinopyrum elongatum	10	Tel1E01G024300, Tel1E01G550200, Tel3E01G459900 ... Tel5E01G066800, Tel5E01G068400, Tel5E01G068700, Tel5E01G068800, Tel5E01G068900, Tel5E01G243300, Tel5E01G667800
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG051080, gene_TRIDC1BG058120 ... gene_TRIDC3AG041390, gene_TRIDC3BG046680, gene_TRIDC5AG004120, gene_TRIDC5AG061660, gene_TRIDC5BG065710, gene_TRIDC7AG070470
Poaceae	Triticum aestivum	45	TraesCS1A02G011700.1.cds1, TraesCS1A02G346900.1 ... TraesCS1B02G327600.1, TraesCS1B02G361000.1.cds1, TraesCS1D02G010300.1.cds1, TraesCS3A02G278900.1.cds1, TraesCS3B02G313100.1, TraesCS3D02G279200.1.cds1, TraesCS4A02G034600.1.cds1, TraesCS4B02G270600.1.cds1, TraesCS5A02G027500.1.cds1, TraesCS5A02G028000.1.cds1, TraesCS5A02G028100.1, TraesCS5A02G028200.1.cds1, TraesCS5A02G028300.1.cds1, TraesCS5A02G028400.1.cds1, TraesCS5A02G028500.1.cds1, TraesCS5A02G028600.1.cds1, TraesCS5A02G028700.1.cds1, TraesCS5A02G029200.1.cds1, TraesCS5A02G136900.1.cds1, TraesCS5A02G426200.1.cds1, TraesCS5B02G026700.1.cds1, TraesCS5B02G027400.1, TraesCS5B02G135600.1.cds1, TraesCS5B02G428100.1.cds1, TraesCS5D02G035300.1.cds1, TraesCS5D02G035700.1.cds1, TraesCS5D02G035800.1, TraesCS5D02G035900.1, TraesCS5D02G036200.1.cds1, TraesCS5D02G036300.1.cds1, TraesCS5D02G036400.1.cds1, TraesCS5D02G036500.1.cds1, TraesCS5D02G434200.1.cds1, TraesCS7A02G503800.1.cds1, TraesCSU02G176500.1.cds1, TraesCSU02G176600.1.cds1, TraesCSU02G177900.1.cds1, TraesCSU02G195400.1.cds1, TraesCSU02G200100.1.cds1, TraesCSU02G203500.1.cds1, TraesCSU02G211400.1.cds1, TraesCSU02G220900.1.cds1, TraesCSU02G230000.1.cds1
Poaceae	Zea mays	12	Zm00001eb032050_P001, Zm00001eb127500_P001 ... Zm00001eb134610_P001, Zm00001eb134620_P001, Zm00001eb153950_P001, Zm00001eb213300_P001, Zm00001eb293470_P001, Zm00001eb300290_P001, Zm00001eb371270_P001, Zm00001eb398960_P001, Zm00001eb409590_P001, Zm00001eb413840_P001
Poaceae	Zoysia japonica	11	nbis-gene-12845, nbis-gene-13851, nbis-gene-15291 ... nbis-gene-16419, nbis-gene-25084, nbis-gene-26396, nbis-gene-44478, nbis-gene-44479, nbis-gene-47472, nbis-gene-47473, nbis-gene-54416
Poaceae	Zoysia macrostachya	11	Zma_g11081, Zma_g24699, Zma_g25360, Zma_g25361, Zma_g2612 ... Zma_g26154, Zma_g26155, Zma_g27261, Zma_g28641, Zma_g6002, Zma_g8601
Portulacaceae	Portulaca oleracea	10	evm.TU.LG04.1848, evm.TU.LG04.2761, evm.TU.LG05.428 ... evm.TU.LG08.424, evm.TU.LG13.460, evm.TU.LG18.485, evm.TU.LG19.1251, evm.TU.LG21.158, evm.TU.LG24.1239, evm.TU.LG26.551
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g30510, gene.Posoc03g22860, gene.Posoc07g08860 ... gene.Posoc09g08030
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_1_RagTag.1070, evm.TU.Scaffold_1_RagTag.1319 ... evm.TU.Scaffold_2_RagTag.1067, evm.TU.Scaffold_2_RagTag.1240, evm.TU.Scaffold_9_RagTag.556
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-21673, nbisL1-mrna-3885, nbisL1-mrna-4119 ... nbisL1-mrna-6278, nbisL1-mrna-6536
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-18151, nbisL1-mrna-20986, nbisL1-mrna-7175
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-18769, nbisL1-mrna-21138, nbisL1-mrna-4124 ... nbisL1-mrna-7361
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000003l.80, add.evm.TU.utg000009l.172 ... add.evm.TU.utg000009l.214, add.evm.TU.utg000016l.154, add.evm.TU.utg000016l.362
Rhizophoraceae	Kandelia obovata	1	Maker00017310
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-17415, nbisL1-mrna-19780, nbisL1-mrna-21139 ... nbisL1-mrna-21748, nbisL1-mrna-21795
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-13279, nbisL1-mrna-13496, nbisL1-mrna-19598 ... nbisL1-mrna-5495, nbisL1-mrna-5686
Salicaceae	Populus euphratica	8	populus_peu06077, populus_peu06078, populus_peu12396 ... populus_peu19914, populus_peu19915, populus_peu25983, populus_peu27632, populus_peu31618
Solanaceae	Lycium barbarum	10	gene-LOC132605458, gene-LOC132608317, gene-LOC132609896 ... gene-LOC132614976, gene-LOC132615225, gene-LOC132629239, gene-LOC132631568, gene-LOC132642190, gene-LOC132644360, gene-LOC132645520
Solanaceae	Solanum chilense	10	SOLCI001503900, SOLCI001845600, SOLCI002249700 ... SOLCI003137000, SOLCI003137100, SOLCI003993300, SOLCI004987400, SOLCI006814400, SOLCI007467700, SOLCI007495600
Solanaceae	Solanum pennellii	10	gene-LOC107001800, gene-LOC107001801, gene-LOC107001931 ... gene-LOC107007921, gene-LOC107008201, gene-LOC107017395, gene-LOC107031808, gene-LOC107032006, gene-LOC107032394, gene-LOC114077367
Tamaricaceae	Reaumuria soongarica	8	STRG.15978_chr06_-, STRG.28975_chr11_-, STRG.7833_chr04_- ... gene_12202, gene_17632, gene_5257, gene_5258, gene_5259
Tamaricaceae	Tamarix chinensis	6	TC01G4688, TC02G1537, TC03G2185, TC05G2710, TC06G0778 ... TC09G2270
Zosteraceae	Zostera marina	5	Zosma01g27570.v3.1, Zosma02g06560.v3.1, Zosma05g03560.v3.1 ... Zosma05g03670.v3.1, Zosma06g11180.v3.1