Basic Information
Locus ID:
BH03.3693
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
protein modification by small protein conjugation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 45422339 | 45433118 | + | BH03.3693 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 121,458.17 Da | 52.42 | 70.98 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 627 | 762 | 6.49456E-52 | IPR000608 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 122 | 443 | 1.8E-70 | IPR000490 |
| Pfam | PF07983 | X8 domain | 460 | 531 | 1.3E-16 | IPR012946 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 629 | 760 | 4.1E-37 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 613 | 764 | 1.23E-48 | IPR016135 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 122 | 443 | 1.82E-75 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 456 | 548 | 1.2E-8 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 615 | 764 | 6.2E-51 | IPR016135 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 121 | 448 | 4.2E-108 | - |
| SMART | SM00768 | X8_cls | 459 | 544 | 5.8E-42 | IPR012946 |
| SMART | SM00212 | ubc_7 | 627 | 767 | 7.8E-51 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 624 | 767 | 43.700718 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1033 | 1069 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 936 | 950 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 921 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 966 | 994 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 1019 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13560.1 | O-Glycosyl hydrolases family 17 protein. | 2.71E-172 |
| RefSeq | XP_025800835.1 | glucan endo-1,3-beta-glucosidase 4 isoform X2 [Panicum hallii] | 0 |
| Q94CD8 | Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1 | 2.6E-171 | |
| TrEMBL | A0A5J9VRR3 | UBC core domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_11620 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH03.3479, BH03.3693, CH03.3658, CH03.3896, CH03.3900 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0574250, gene-QOZ80_7BG0605530 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0131570.1.CDS1 |
| Poaceae | Oryza coarctata | 3 | Oco13G002330, Oco13G010850, Oco14G011590 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g07820.1, LOC_Os07g38950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G326200 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G003650, Chr24G011010, Chr27G013620, Chr28G010240 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG023840, gene_TRIDC2BG029300 |
| Poaceae | Triticum aestivum | 2 | TraesCS2A02G187100.1.cds1, TraesCS2D02G200800.1.cds1 |
| Poaceae | Zea mays | 2 | Zm00001eb107550_P001, Zm00001eb325390_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10513, nbis-gene-606 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5419, Zma_g6711 |