Basic Information
Locus ID:
BH03.368
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH03 | 4784877 | 4790442 | + | BH03.368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 138,686.89 Da | 42.55 | 109.11 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 382 | 582 | 8.77704E-107 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 69 | 356 | 1.10359E-85 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 687 | 981 | 1.10839E-76 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1004 | 1224 | 9.9149E-122 | - |
| Pfam | PF00005 | ABC transporter | 1023 | 1171 | 1.8E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 68 | 335 | 1.1E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 400 | 534 | 2.4E-21 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 691 | 929 | 5.2E-27 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 997 | 1231 | 2.13E-67 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 377 | 603 | 9.26E-58 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 686 | 987 | 2.09E-47 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 61 | 361 | 1.16E-31 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 365 | 614 | 3.7E-77 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 989 | 1241 | 5.5E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 649 | 987 | 1.9E-54 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 45 | 364 | 2.2E-46 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1032 | 1217 | 2.4E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 409 | 582 | 4.7E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1006 | 1240 | 17.520475 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 382 | 605 | 23.249405 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 68 | 348 | 31.633593 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 689 | 969 | 34.810833 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 507 | 521 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034569184.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6TE11 | ABC transporter C family member 3 OS=Setaria viridis OX=4556 GN=SEVIR_8G030300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology